MmuALTA0015150-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000020696 | Rffl
Description
ring finger and FYVE like domain containing protein [Source:MGI Symbol;Acc:MGI:1914588]
Coordinates
chr11:82626171-82632105:-
Coord C1 exon
chr11:82631918-82632105
Coord A exon
chr11:82626313-82626315
Coord C2 exon
chr11:82626171-82626312
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTCCTGTCTCTTGCTCTAAGCAG
3' ss Score
4.51
Exon sequences
Seq C1 exon
ATTTTATCATGTGGGCATCCTGCTGCAACTGGTTCTGCTTGGATGGACAGCCTGAGGAGGCACCACCACCACAGGGAGCCAGGACACAAGCCTATTCCAACCCTGGGTACAGCTCCTTCCCTTCCCCCACAGGCTCGGAACCTAGCTGCAAGGCCTGCGGGGTCCATTTCGCAAGCACAACCCGGAAG
Seq A exon
CAG
Seq C2 exon
CAGACCTGCTTGGACTGTAAGAAAAACTTCTGCATGACTTGTTCGAGCCAAGAGGGGAATGGGCCACGCCTCTGCCTTCTCTGCCTACGGTTCCGAGCCACGGCCTTCCAGCGGGAGGAGCTCATGAAGATGAAGGTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020696-9-10,9-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.361
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=PU(31.8=33.3)
A:
NA
C2:
PF0136316=FYVE=PD(73.3=46.0),PF102084=Armet=WD(100=55.5),PF0203722=SAP=WD(100=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTAGCTGCAAGGCCTG
R:
CCCTCTTGGCTCGAACAAGTC
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: