RnoALTA0033645-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007596 | Rffl
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:RGD Symbol;Acc:727916]
Coordinates
chr10:70167704-70172741:-
Coord C1 exon
chr10:70172554-70172741
Coord A exon
chr10:70167839-70167841
Coord C2 exon
chr10:70167704-70167838
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTCTTGTCTCTTGCTCTAAGCAG
3' ss Score
4.2
Exon sequences
Seq C1 exon
ATTTTATCATGTGGGCATCCTGCTGCAACTGGTTCTGCTTGGATGGACAGCCTGAGGAGACACCACCACCGCAGGGAGCCAGGACACAAGCCTATTCCAACCCTGGGTACAGCTCCTTCCCTTCCCCCACAGGCTCGGAACCTAGCTGCAAGGCCTGTGGGGTCCATTTCGCAAGCACCACCCGGAAG
Seq A exon
CAG
Seq C2 exon
CAGACCTGCTTGGACTGTAAGAAAAACTTCTGCATGACTTGCTCCAGCCAAGAGGGGAATGGGCCACGCCTCTGCCTTCTCTGCCTACGCTTCCGAGCCACGGCCTTTCAGCGAGAGGAGCTCATGAAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007596-11-11,11-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.387
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=PU(30.4=35.0)
A:
NA
C2:
PF0136316=FYVE=PD(73.9=47.8),PF102084=Armet=WD(100=57.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTAGCTGCAAGGCCTG
R:
TCTTGGCTGGAGCAAGTCATG
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]