MmuALTA0015883-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035236 | Scai
Description
suppressor of cancer cell invasion [Source:MGI Symbol;Acc:MGI:2443716]
Coordinates
chr2:39082710-39083610:-
Coord C1 exon
chr2:39083538-39083610
Coord A exon
chr2:39082853-39082927
Coord C2 exon
chr2:39082710-39082852
Length
75 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AACTCCCAGTCATTTCCTAGGTC
3' ss Score
3.9
Exon sequences
Seq C1 exon
AATTTTACAAATTTGTTTGGACAGCCACTCGTCTGCCTTCTTTCTCCCACGGCATATCCAAAAGCTTTGCAAG
Seq A exon
GTCAAATGTTAAGTGAAACTTCACACTGTCTTAGCAGTACTTGAACTGTTTCACTGTCTCCCTGACTGTGAATAG
Seq C2 exon
TGCCGATGTCTCTCTGTGGGAGATGGCATTTCACTGCTACTTCCCAGCCCGAAGTCCTGTCTGCTGACATAGTTTGACACAGGAAGTGATGGTCAGCACTTGAATGCCTGAGAGAAGCTGGAGACTTACACCGTTGTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035236-32-28,32-27,32-26-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(32.0=100)
A:
NA
C2:
PF120703=DUF3550=PD(14.7=42.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTTGGACAGCCACTCGTC
R:
TCAGGCATTCAAGTGCTGACC
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types