MmuALTA0015886-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028049 | Scamp3
Description
secretory carrier membrane protein 3 [Source:MGI Symbol;Acc:MGI:1346346]
Coordinates
chr3:89177990-89179223:+
Coord C1 exon
chr3:89177990-89178067
Coord A exon
NA
Coord C2 exon
chr3:89179095-89179223
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTAAGGCTTGTCTCCAGCAGCCC
3' ss Score
2.49
Exon sequences
Seq C1 exon
GACCCAGCTGTGATCCAGCACCGACCCAGCCAGCAGTATGCCACGCTGGACGTCTACAACCCCTTTGAGAACCGAGAG
Seq A exon
NA
Seq C2 exon
CCCCCACCAGCCTACGAGCCTCCTGCTCCAGCCCCAGCACCTCTACCGCCACCCTCAGCTCCCTCTGTACAGTCCTCAAGAAAGCTCAGCCCCACAGAGCCCAGGAACTACGGCTCCTACAGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028049-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF049918=LicD=PU(26.4=67.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCCCTTTGAGAACCGAG
R:
CTGTACAGAGGGAGCTGAGGG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types