RnoALTA0009269-4/9 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188489872-188491234:+
Coord C1 exon
chr2:188489872-188489949
Coord A exon
chr2:188491114-188491185
Coord C2 exon
chr2:188491186-188491234
Length
72 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTAAGGCTTGTCTCCAGCAGCCC
3' ss Score
2.49
Exon sequences
Seq C1 exon
GACCCAGCTGTGATCCAGCACCGACCCAGCCAGCAGTATGCCACGCTTGACGTCTACAACCCCTTTGAGAACCGAGAG
Seq A exon
CCCCCACCAGCCTATGAGCCTCCTGCCCCAGCCCCAGCCCCTCTGCCGCCACCCTCAGCTCCTTCTGTACAG
Seq C2 exon
TCCTCAAGAAAGCTCAGCCCCGCAGAGCCCAAGAACTACGGCTCCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-23-37,23-36,23-35,23-34,23-33,23-32,23-31,23-30,23-29-4/9
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=NA C2=0.989
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(4.8=53.8)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAGCTGTGATCCAG
R:
TGTAGGAGCCGTAGTTCTTGGG
Band lengths:
127-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]