RnoEX6010271 @ rn6
Exon Skipping
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188489872-188491440:+
Coord C1 exon
chr2:188489872-188489949
Coord A exon
chr2:188491114-188491242
Coord C2 exon
chr2:188491320-188491440
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTAAGGCTTGTCTCCAGCAGCCC
3' ss Score
2.49
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACCCAGCTGTGATCCAGCACCGACCCAGCCAGCAGTATGCCACGCTTGACGTCTACAACCCCTTTGAGAACCGAGAG
Seq A exon
CCCCCACCAGCCTATGAGCCTCCTGCCCCAGCCCCAGCCCCTCTGCCGCCACCCTCAGCTCCTTCTGTACAGTCCTCAAGAAAGCTCAGCCCCGCAGAGCCCAAGAACTACGGCTCCTACAGCACTCAG
Seq C2 exon
GCTACAGCTGCAGCAGCCACCGCTGAGCTGCTGAAGAAGCAGGAGGAGCTCAACCGGAAGGCAGAGGAGTTGGACCGCAGGGAGCGAGAGCTGCAGCATGTTGCCCTGGGTGGTGCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-'23-38,'23-34,25-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=0.983 C2=0.695
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(4.8=53.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAGCTGTGATCCAG
R:
CTGCACCACCCAGGGCAA
Band lengths:
196-325
Functional annotations
There are 1 annotated functions for this event
PMID: 19158374
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, surface plasmon resonance. ELM ID: ELMI001334; ELM sequence: PPSAPS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]