HsaEX0056363 @ hg19
Exon Skipping
Gene
ENSG00000116521 | SCAMP3
Description
secretory carrier membrane protein 3 [Source:HGNC Symbol;Acc:10565]
Coordinates
chr1:155230121-155232050:-
Coord C1 exon
chr1:155231877-155232050
Coord A exon
chr1:155230328-155230450
Coord C2 exon
chr1:155230121-155230241
Length
123 bp
Sequences
Splice sites
3' ss Seq
TAAGGTCTTTTCCTCAACAGCCA
3' ss Score
6.56
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGCGGGGCGAACTGAGGCGAGTGAAGTGGACTCTGAGGGCTACCGCTACCGCCACTGCTGCGGCAGGGGCGTGGAGGGCAGAGGGCCGCGGAGGCCGCAGTTGCAAACATGGCTCAGAGCAGAGACGGCGGAAACCCGTTCGCCGAGCCCAGCGAGCTTGACAACCCCTTTCAG
Seq A exon
CCACCACCAGCCTATGAGCCTCCAGCCCCTGCCCCATTGCCTCCACCCTCAGCTCCCTCCTTGCAGCCCTCGAGAAAGCTCAGCCCCACAGAACCTAAGAACTATGGCTCATACAGCACTCAG
Seq C2 exon
GCCTCAGCTGCAGCAGCCACAGCTGAGCTGCTGAAGAAACAGGAGGAGCTCAACCGGAAGGCAGAGGAGTTGGACCGAAGGGAGCGAGAGCTGCAGCATGCTGCCCTGGGGGGCACAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116521_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.805
Domain overlap (PFAM):
C1:
NO
A:
PF049918=LicD=PU(26.4=70.7)
C2:
PF049918=LicD=FE(36.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGAGGCGAGTGAAGTGG
R:
CTCCCTTCGGTCCAACTCCTC
Band lengths:
250-373
Functional annotations
There are 1 annotated functions for this event
PMID: 19158374
This event
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, surface plasmon resonance. ELM ID: ELMI001334; ELM sequence: PPSAPS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)