BtaEX0031471 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012094 | SCAMP3
Description
secretory carrier membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:10565]
Coordinates
chr3:15432609-15433657:+
Coord C1 exon
chr3:15432609-15432686
Coord A exon
chr3:15433330-15433452
Coord C2 exon
chr3:15433537-15433657
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTCCAAACTCAACAGCCA
3' ss Score
6.23
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GACCCAGCTGTGATCCAGCATCGACCCAGCACGCACTATGCTACTCTTGACGTCTACAACCCTTTTGAGACCCGGGAG
Seq A exon
CCACCAGCAAGCTATGAGCCTCCTGCCCCTGTTCCGATAGCTCCACCCTCAGCTCCACCCTTGCAGTCCTCAAGAAAACTCAGCCCCACAGAACCCAAGAACTATGGCTCCTACAGCACCCAG
Seq C2 exon
GCTTCAACTGCAGCAGCCACAGCTGAGCTGCTAAAGAAACAGGAGGAGCTCAACCGAAAGGCAGAGGAGTTGGACCGAAGGGAGCGAGAACTCCAGCATGCTGCCCTGGGCAGCACAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012094_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
PF049918=LicD=PU(28.3=78.0)
C2:
PF049918=LicD=FE(35.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAGCTGTGATCCAG
R:
TAGCTGTGCTGCCCAGGG
Band lengths:
199-322
Functional annotations
There are 1 annotated functions for this event
PMID: 19158374
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, surface plasmon resonance. ELM ID: ELMI001334; ELM sequence: PPSAPS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development