DreEX6072086 @ danRer10
Exon Skipping
Gene
ENSDARG00000016765 | scamp3
Description
secretory carrier membrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-041114-33]
Coordinates
chr19:9069321-9072760:+
Coord C1 exon
chr19:9069321-9069404
Coord A exon
chr19:9070999-9071106
Coord C2 exon
chr19:9072457-9072760
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTGGGTAATGAAGCCT
3' ss Score
-0.2
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
GATCCATCAGTGACTCAGCACAGCAGCAACACTGGCTATGCCACGCTGGACCTCTACAACCCATTCGACAACAACCAAACAGCG
Seq A exon
CCTCCACCTCCCTATGAAGCCACATCTCCTGCTGCGCCCCCTGCCCAAACGCCTCCCAGCAGGACCACGCCAACTGAACCCAGGAACTATGGATCCTACGGGTCACAG
Seq C2 exon
TCTGCAGTAAATGCCACCACAGCAGATCTGTTGAAGAAGCAGGAGGAGCTGGAAAGAAAAGCACAGGAGCTGGAGAGAAGAGAAAGAGAGCTGAATGCTCATGCACTTGGATCTGGAGCCTGTGAGTGAGGGAATCAGAGAAAATAGCTTGATATTATTGAGATAATTAATGTAATTATATGTAAAGGAAATGATTTGACTTTTACTGCTGGCATTGTGTATATATGTGATGGCAGTTTTCAGTTTGTTTTGCTTTTAATAATCCTTGTAATGCTTAAAATGACTCAAAATTTTAAAACTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016765-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCCATTCGACAACAACCA
R:
ACACAATGCCAGCAGTAAAAGT
Band lengths:
249-357
Functional annotations
There are 1 annotated functions for this event
PMID: 19158374
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, surface plasmon resonance. ELM ID: ELMI001334; ELM sequence: PPSAPS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]