MmuEX6072104 @ mm10
Exon Skipping
Gene
ENSMUSG00000028049 | Scamp3
Description
secretory carrier membrane protein 3 [Source:MGI Symbol;Acc:MGI:1346346]
Coordinates
chr3:89177990-89179437:+
Coord C1 exon
chr3:89177990-89178067
Coord A exon
chr3:89179095-89179223
Coord C2 exon
chr3:89179317-89179437
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTAAGGCTTGTCTCCAGCAGCCC
3' ss Score
2.49
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACCCAGCTGTGATCCAGCACCGACCCAGCCAGCAGTATGCCACGCTGGACGTCTACAACCCCTTTGAGAACCGAGAG
Seq A exon
CCCCCACCAGCCTACGAGCCTCCTGCTCCAGCCCCAGCACCTCTACCGCCACCCTCAGCTCCCTCTGTACAGTCCTCAAGAAAGCTCAGCCCCACAGAGCCCAGGAACTACGGCTCCTACAGCACCCAG
Seq C2 exon
GCCTCAGCTGCAGCGGCCACTGCTGAGCTGCTGAAGAAGCAGGAGGAACTCAACCGCAAGGCAGAGGAGTTGGACCGCCGGGAGCGAGAACTGCAGCATGTCGCCCTGGGTGGTGCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028049-'1-4,'1-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.715
Domain overlap (PFAM):
C1:
NO
A:
PF049918=LicD=PU(26.4=67.4)
C2:
PF049918=LicD=FE(36.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGATCCAGCACCGACC
R:
CACCACCCAGGGCGACAT
Band lengths:
186-315
Functional annotations
There are 1 annotated functions for this event
PMID: 19158374
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, surface plasmon resonance. ELM ID: ELMI001334; ELM sequence: PPSAPS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types