GgaEX1051008 @ galGal4
Exon Skipping
Gene
ENSGALG00000001689 | SCAMP2
Description
secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:10564]
Coordinates
chr10:1905212-1906800:+
Coord C1 exon
chr10:1905212-1905292
Coord A exon
chr10:1905883-1905972
Coord C2 exon
chr10:1906683-1906800
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTCTTGCTCTTTGCTTTCAGACA
3' ss Score
9.52
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GATCCCTCAGTGACACAGCTCACGAACGCTAGCCAGAGCGGCTTGGATGAATTCAACCCCTTTTCTGAGAGCTCCCAGCTG
Seq A exon
ACACATGCGGCGCGGACGGCGCCGGCCACGCAGCCCTCTGGGCCCTCACAGCCTGCTGTTCTGCAGACATCTGTGGAGCCCACCCCACAG
Seq C2 exon
GCTGTGGCTGCAGCAGCACAGGCCGGGCTGCTTCAGCAGCAGGCAGAACTAGAGAGGAAAGCAGCTGAGCTGGAGAAGAAGGAAAGGGAATTGCAGAACAATGCAGCCAGCATTAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001689-'4-2,'4-1,5-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.967 C2=0.700
Domain overlap (PFAM):
C1:
PF117403=KfrA_N=PU(26.0=96.3)
A:
PF117403=KfrA_N=FE(29.0=100)
C2:
PF117403=KfrA_N=FE(39.0=100),PF120723=DUF3552=PU(84.8=97.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTCAGTGACACAGCTCA
R:
TCCCTTTCCTTCTTCTCCAGCT
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]