BtaEX6077593 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005844 | SCAMP2
Description
Bos taurus secretory carrier membrane protein 2 (SCAMP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102170]
Coordinates
chr21:34218503-34221313:+
Coord C1 exon
chr21:34218503-34218571
Coord A exon
chr21:34219003-34219101
Coord C2 exon
chr21:34221196-34221313
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCCACTCTGCCCCACGCAGACA
3' ss Score
7.07
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
GATCCCTCTGTGACCCAGCTGACCAATGCCCCACAGGGAGGCCTGGCTGAATTCAACCCTTTCTCAGAG
Seq A exon
ACAAATGCAGCGACGACGGTTCCTGTCTCACAGATGCCCGGGGCCTCGCAGCCGGCAGTTCTCCAACCCTCAGTGGAGCCCACCCAGCCAACCCCCCAG
Seq C2 exon
GCTGTGGCCTCTGCAGCCCAGGCAAGCCTGCTCCGGCAGCAGGAAGAACTGGACAGGAAAGCGGCCGAGCTGGAACGGAAGGAGCGGGAGCTTCAGAACACGGTGGCCAACTTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005844-'6-8,'6-4,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.990 C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACCCAGCTGACCAATG
R:
TGTAAGTTGGCCACCGTGTTC
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]