HsaEX6075829 @ hg38
Exon Skipping
Gene
ENSG00000140497 | SCAMP2
Description
secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:10564]
Coordinates
chr15:74852069-74873365:-
Coord C1 exon
chr15:74872924-74873365
Coord A exon
chr15:74854021-74854119
Coord C2 exon
chr15:74852069-74852186
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTGATTTGTTCCATGTAGACA
3' ss Score
7.02
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
AGAACCGCTGCCTCGCTCCCGGAAGTGGAGGGTCTACACGAAGCGCCGCTGGGTCTGGGTGCCCGGAGGCAGCAGCGTTCGCGGAGTTCGCCCGCTGGCCCCCGATCACCATGTCGGCTTTCGACACCAACCCCTTCGCGGACCCAGTGGATGTAAACCCCTTCCAGGTAGAGCCCCTCTCCCGCCATCCAGCTCTCAGATTTCCCTAGGGCCCACGGCCGCCGCCCGGGCCTCTCGCTAGAGCCGGGAGACGTGGCGTAGGAGGGACGGGTCATCTGCCCAATGGGAGAGCGGGCTTTGAGGTCTGGCCTATCGTAACGCGTGAGGGGCGCGACTAGCAGCAGGTGGAACTGCAGAGGAGGCGGGGCGCTGAAGTGTTGGAGACAGTGGGGTCTTCTAGCACCCGGAGGCTGGGCTGTGCTAGGGAAGGGGACTGGAGCAG
Seq A exon
ACAAATGCAGCGACAACAGTTCCTGTCACCCAACTCCCTGGGTCCTCACAGCCAGCGGTTCTCCAGCCATCAGTGGAACCAACCCAGCCGACCCCCCAG
Seq C2 exon
GCCGTGGTGTCTGCAGCCCAGGCAGGCCTGCTCCGGCAGCAGGAAGAACTGGACAGGAAAGCTGCCGAGCTGGAACGCAAGGAGCGGGAGCTGCAGAACACTGTAGCCAACTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140497_MULTIEX1-2/8=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.975 C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTAGCAGCAGGTGGAACTG
R:
TCCTGTCCAGTTCTTCCTGCT
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains