RnoEX0078300 @ rn6
Exon Skipping
Gene
ENSRNOG00000019136 | Scamp2
Description
secretory carrier membrane protein 2 [Source:RGD Symbol;Acc:68348]
Coordinates
chr8:62356366-62358762:+
Coord C1 exon
chr8:62356366-62356434
Coord A exon
chr8:62356826-62356924
Coord C2 exon
chr8:62358645-62358762
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTTTGCCCCACTCAGACA
3' ss Score
6.67
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GATCCTTCTGTGACCCAGCTGACCAGTGCTCCTCAGAGTGGCCTGGCTGAGTTCAATCCCTTCTCAGAG
Seq A exon
ACAAATGCAGCGACAACAGTTCCTGTCACACAACTTCCTGGGCCCTCCCAGCCAGCAGTTCTCCAGCCCTCAGTGGAGCCAGCACAGCCATCGCCCCAG
Seq C2 exon
GCTGTTGCGGCTGCAGCCCAGGCAGGCCTGCTTCGGCAGCAGGAAGAGTTAGACAGGAAAGCTGCTGAGCTGGAACGCAAGGAGCGAGAGTTGCAGAACACTGCGGCGAATTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019136_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.970 C2=0.383
Domain overlap (PFAM):
C1:
NO
A:
PF120723=DUF3552=PU(0.1=0.0)
C2:
PF120723=DUF3552=FE(84.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTCTGTGACCCAGCTGA
R:
CAAATTCGCCGCAGTGTTCTG
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]