HsaEX6075829 @ hg19
Exon Skipping
Gene
ENSG00000140497 | SCAMP2
Description
secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:10564]
Coordinates
chr15:75144410-75146990:-
Coord C1 exon
chr15:75146922-75146990
Coord A exon
chr15:75146362-75146460
Coord C2 exon
chr15:75144410-75144527
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTGATTTGTTCCATGTAGACA
3' ss Score
7.02
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GATCCCTCTGTGACCCAGCTGACCAACGCCCCGCAGGGCGGCCTGGCGGAATTCAACCCCTTCTCAGAG
Seq A exon
ACAAATGCAGCGACAACAGTTCCTGTCACCCAACTCCCTGGGTCCTCACAGCCAGCGGTTCTCCAGCCATCAGTGGAACCAACCCAGCCGACCCCCCAG
Seq C2 exon
GCCGTGGTGTCTGCAGCCCAGGCAGGCCTGCTCCGGCAGCAGGAAGAACTGGACAGGAAAGCTGCCGAGCTGGAACGCAAGGAGCGGGAGCTGCAGAACACTGTAGCCAACTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140497-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=0.970 C2=0.188
Domain overlap (PFAM):
C1:
PF152631=DUF4593=PU(3.7=8.7),PF117403=KfrA_N=PU(7.1=26.1)
A:
PF152631=DUF4593=FE(59.3=100),PF117403=KfrA_N=FE(41.0=100),PF120723=DUF3552=PU(2.1=3.0),PF049918=LicD=PU(2.4=6.1)
C2:
PF152631=DUF4593=PD(33.3=45.0),PF117403=KfrA_N=FE(50.0=100),PF120723=DUF3552=FE(83.0=100),PF049918=LicD=FE(47.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGACCCAGCTGACCAA
R:
CTACAGTGTTCTGCAGCTCCC
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)