GgaEX1051008 @ galGal3
Exon Skipping
Gene
ENSGALG00000001689 | SCAMP2
Description
NA
Coordinates
chr10:1815996-1817591:+
Coord C1 exon
chr10:1815996-1816083
Coord A exon
chr10:1816674-1816763
Coord C2 exon
chr10:1817474-1817591
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTCTTGCTCTTTGCTTTCAGACA
3' ss Score
9.52
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CTTTCAGGATCCCTCAGTGACACAGCTCACGAACGCTAGCCAGAGCGGCTTGGATGAATTCAACCCCTTTTCTGAGAGCTCCCAGCTG
Seq A exon
ACACATGCGGCGCGGACGGCGCCGGCCACGCAGCCCTCTGGGCCCTCACAGCCTGCTGTTCTGCAGACATCTGTGGAGCCCACCCCACAG
Seq C2 exon
GCTGTGGCTGCAGCAGCACAGGCCGGGCTGCTTCAGCAGCAGGCAGAACTAGAGAGGAAAGCAGCTGAGCTGGAGAAGAAGGAAAGGGAATTGCAGAACAATGCAGCCAGCATTAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001689-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.900 C2=0.475
Domain overlap (PFAM):
C1:
PF117403=KfrA_N=PU(22.9=75.9)
A:
PF117403=KfrA_N=FE(30.2=100)
C2:
PF117403=KfrA_N=FE(40.6=100),PF120723=DUF3552=PU(84.8=97.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGATCCCTCAGTGACACA
R:
TCCTTCTTCTCCAGCTCAGCT
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]