MmuEX6066212 @ mm9
Exon Skipping
Gene
ENSMUSG00000040188 | Scamp2
Description
secretory carrier membrane protein 2 [Source:MGI Symbol;Acc:MGI:1346518]
Coordinates
chr9:57425000-57427357:+
Coord C1 exon
chr9:57425000-57425068
Coord A exon
chr9:57425446-57425544
Coord C2 exon
chr9:57427240-57427357
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTTTGCCCCACTCAGACA
3' ss Score
6.64
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GATCCCTCTGTGACCCAGCTGACCAATGCTCCTCAGAGTGGCCTGGCTGAGTTCAATCCCTTCTCAGAG
Seq A exon
ACAAATGCAGCGACAACAGTTCCTGCCACACAAGCTCCTGGGCCCTCCCAGCCAGCAGTTCTCCAGCCCTCAGTGGAACCAGCACAGCCAACGCCCCAG
Seq C2 exon
GCTGTTGCAGCTGCGGCCCAGGCAGGCTTGCTTCGACAGCAGGAAGAACTAGACAGGAAAGCTGCCGAGCTGGAACGCAAGGAGCGAGAGTTGCAGAACACTGCAGCGAATTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040188-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120723=DUF3552=PU(86.7=97.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGACCAATGCTCCTCAG
R:
TGCAAATTCGCTGCAGTGTTC
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: