DreEX6100354 @ danRer10
Exon Skipping
Gene
ENSDARG00000010279 | scamp2
Description
secretory carrier membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2702]
Coordinates
chr25:2900967-2902457:-
Coord C1 exon
chr25:2902380-2902457
Coord A exon
chr25:2901156-2901230
Coord C2 exon
chr25:2900967-2901081
Length
75 bp
Sequences
Splice sites
3' ss Seq
AATTGTGATTTTTCCCTCAGGGA
3' ss Score
9.31
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GATCCGTCTGTCACTCAGGTGACGAACTCTGGAGTGGATCACATTGAAAGCTTTAGTCCGTTTCCGGATGGGAATCAG
Seq A exon
GGATCCACTATTCCAGCATCAAGCGCCCCGACTCAACCTGCTGTCCTGCAGCCGTCAGTCGAGCCCAGTCCACAG
Seq C2 exon
GCCACAGCTGCCGCTGCGCAGGCCAGTCTGATCAAACAACAGGAGGAGCTGGAGAGAAAAGCAGCAGAGCTGGAGAGAAGAGAACAAGAGCTGCAGAGTAGAGGAGCACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010279-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACGAACTCTGGAGTGGA
R:
GCTCCTCTACTCTGCAGCTCT
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]