GgaEX1051007 @ galGal4
Exon Skipping
Gene
ENSGALG00000004425 | SCAMP1
Description
secretory carrier-associated membrane protein 1 [Source:RefSeq peptide;Acc:NP_001264922]
Coordinates
chrZ:22596687-22605064:-
Coord C1 exon
chrZ:22604987-22605064
Coord A exon
chrZ:22597059-22597157
Coord C2 exon
chrZ:22596687-22596798
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACTGACTCTTGTATTCTTAGGCT
3' ss Score
7.56
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GATCCTTCGGTTACGCAAGTGACAAGAAATGTTCCCCCTGGATTAGATGAATACAATCCTTTCTCTGATTCGAGAACA
Seq A exon
GCTCCTCCAGGAAATGTGAAAATGCCTAATGTACCCAGTACTCAGCCAGCAATAATGAAACCAACAGAAGAACCACCTGCTTACACTCAAATTGCAAAG
Seq C2 exon
GAGCATGCCTTGGCCCAGGCAGAACTACTAAAGCGTCAAGAAGAATTGGAAAGAAAAGCTGCTGAACTGGATCGCAGAGAAAGGGAAATGCAGAGTCTGAATCAGCAGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004425_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.970 C2=0.605
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAGAAATGTTCCCCCTGG
R:
CCCCCTGCTGATTCAGACTCT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]