MmuEX0041130 @ mm9
Exon Skipping
Gene
ENSMUSG00000021687 | Scamp1
Description
secretory carrier membrane protein 1 [Source:MGI Symbol;Acc:MGI:1349480]
Coordinates
chr13:95002027-95023025:-
Coord C1 exon
chr13:95022948-95023025
Coord A exon
chr13:95003037-95003135
Coord C2 exon
chr13:95002027-95002135
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATCGTCTCTAACCTTTATAGCCT
3' ss Score
6.87
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GACCCATCTGTCACACAGGTGACAAGAAATGTGCCACCGGGACTTGATGAATACAACCCTTTCTCCGACTCTCGCACG
Seq A exon
CCTCCACCAGGCAGTGTGAAAATGCCTAATGTACCCAACACCCAGCCAGCAATAATGAAGCCAACAGAGGAACATCCAGCTTACACACAGATCACAAAG
Seq C2 exon
GAACATGCCTTGGCTCAAGCTGAACTGCTCAAGCGCCAAGAAGAGCTGGAGAGAAAAGCTGCAGAGTTGGATCGTCGTGAGCGCGAGATGCAGAACCTGAGCCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021687_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.903 C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
PF049918=LicD=PU(23.0=88.5)
C2:
PF049918=LicD=FE(36.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTGACAAGAAATGTGCCA
R:
CTGGCTCAGGTTCTGCATCTC
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: