BtaEX6050871 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007371 | SCAMP1
Description
Bos taurus secretory carrier membrane protein 1 (SCAMP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076054]
Coordinates
chr10:9400385-9446384:+
Coord C1 exon
chr10:9400385-9400462
Coord A exon
chr10:9445203-9445301
Coord C2 exon
chr10:9446276-9446384
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTCTTAATCTCCTAGCCT
3' ss Score
7.27
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GACCCATCAGTTACACAGGTGACAAGAAATGTCCCACCAGGACTTGATGAATACAATCCATTCTCAGATTCTAGAACA
Seq A exon
CCTCCACCAGGTAATGTGAAAATGCCTAACGTACCCAGTACACAGCCAGCAATAATGAAGCCAACAGAAGAACATCCAGCTTATACACAGATTGCAAAG
Seq C2 exon
GAACATGCCTTGGCCCAAGCTGAACTTCTTAAGCGCCAGGAAGAACTAGAAAGAAAAGCAGCGGAGTTAGACCGTCGAGAACGAGAAATGCAGAACCTCAGTCAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007371-'12-5,'12-4,17-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.909 C2=0.649
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCAGTTACACAGGTGACA
R:
ACTGAGGTTCTGCATTTCTCGT
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]