RnoEX0078292 @ rn6
Exon Skipping
Gene
ENSRNOG00000061582 | Scamp1
Description
secretory carrier membrane protein 1 [Source:RGD Symbol;Acc:3625]
Coordinates
chr2:23881261-23909016:-
Coord C1 exon
chr2:23908933-23909016
Coord A exon
chr2:23885042-23885140
Coord C2 exon
chr2:23881261-23881389
Length
99 bp
Sequences
Splice sites
3' ss Seq
AATGTCTTTAACCTTTTTAGCCT
3' ss Score
6.9
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
TTCCAGGACCCATCTGTCACACAGGTGACAAGAAATGTGCCACCGGGACTTGATGAATATAATCCTTTCTCTGATTCTAGAACG
Seq A exon
CCTCCACCAGGTGGTGTGAAAATGCCTAATGTACCCAACACCCAGCCAGCAATAATGAAGCCGACCGAGGAGCATCCGGCTTACACACAGATCACAAAG
Seq C2 exon
GGAGAAAAAATAATTGGCCACCTCTTCCTAGCAATTTCCCTGTGGGGCCTTGTTTCTATCAAGACTTTTCTGTAGACATTCCCGTAGAGTTCCAGAAGACAGTGAAGCTTATGTACTACCTATGGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061582_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.955 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF041448=SCAMP=PU(23.6=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCATCTGTCACACAGG
R:
TGTCTTCTGGAACTCTACGGGA
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]