HsaEX6098825 @ hg38
Exon Skipping
Gene
ENSG00000085365 | SCAMP1
Description
secretory carrier membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:10563]
Coordinates
chr5:78388837-78450034:+
Coord C1 exon
chr5:78388837-78388914
Coord A exon
chr5:78415520-78415618
Coord C2 exon
chr5:78449933-78450034
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTTAATCCTCCTAGCCT
3' ss Score
5.46
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GATCCATCAGTTACACAAGTGACAAGAAATGTTCCACCAGGACTTGATGAATATAATCCATTCTCGGATTCTAGAACA
Seq A exon
CCTCCACCAGGCGGTGTGAAGATGCCTAATGTACCCAATACACAACCAGCAATAATGAAACCAACAGAGGAACATCCAGCTTATACACAGATTGCAAAG
Seq C2 exon
GAGTGACAGTTCATTTAGATTCTTTGTATTCTTCTTCGTCTATATTTGTCAGTTTGCTGTACATGTACTCCAAGCTGCAGGATTTCATAACTGGGGCAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085365_MULTIEX1-4/9=2-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=0.946 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF041448=SCAMP=FE(19.1=100)
Main Skipping Isoform:
ENST00000621999fB6125
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCAGTTACACAAGTGACA
R:
GCCCCAGTTATGAAATCCTGCA
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains