MmuALTA0015962-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000038677 | Scube3
Description
signal peptide, CUB domain, EGF-like 3 [Source:MGI Symbol;Acc:MGI:3045253]
Coordinates
chr17:28301243-28301735:+
Coord C1 exon
chr17:28301243-28301347
Coord A exon
chr17:28301619-28301620
Coord C2 exon
chr17:28301621-28301735
Length
2 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
AGCTTCTCTTCTCCCTCTAGAGG
3' ss Score
9.37
Exon sequences
Seq C1 exon
AGTCAGAGAACGGTTTCACCGTGAGCTGTGGTACCCCGAGCCCTAAAGCTGCTCCAGCCCGAGTGATCCACTCTGGGAACAGCACCGTCTCCAGCTCCTGCCATG
Seq A exon
AG
Seq C2 exon
GCTGCAGTGCTGCCAGTCAAGCAGAGAGCCTCCTTCAAGATCAAGGATGCCAAATGTCGCCTGCATCTGCGAAACAAAGGCAAAGCCGAGGAGGCCAGCAGGATCCTGGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038677-12-19,12-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCCGAGCCCTAAAGCTG
R:
AGGAGGCTCTCTGCTTGACTG
Band lengths:
108-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: