MmuALTA0016645-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25232968-25233426:-
Coord C1 exon
chr2:25233303-25233426
Coord A exon
chr2:25233034-25233054
Coord C2 exon
chr2:25232968-25233033
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
ACCTGACCTGACCCCTGCAGGAA
3' ss Score
7.92
Exon sequences
Seq C1 exon
AGCTAGGATTGGGCCTGGGTCTTCCCCTTCTTGAAATCCATGCCGAATTCCCTCGCCGGTGGCCAGGTCCCCAACCCTACTCTGGATGCCTTTGACCTGGTGGACCGGAGTCTGAGAAATGCAG
Seq A exon
GAATCTCCGGTTCCATTCCAG
Seq C2 exon
GCTTGGAAGAGGGAGGTACAGATCCCTGGACCTTCTCTCCGCTGAAGAACGCTGACCAACTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469-7-10,7-8,7-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATGCCTTTGACCTGGTG
R:
AGTTGGTCAGCGTTCTTCAGC
Band lengths:
104-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types