MmuALTA0017802-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59484826-59537484:+
Coord C1 exon
chr2:59484826-59484929
Coord A exon
chr2:59537405-59537406
Coord C2 exon
chr2:59537407-59537484
Length
2 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
TCTTTTTCTTTTCTCCTTAGAGA
3' ss Score
11.19
Exon sequences
Seq C1 exon
GAGCTGACTGTTGGGCACAGAGGAAGGACAGGAGAGAGAGCTGAGACATAAGGACCACTGTACCGCGTTTCTTCCTTCCATGAATGAGAAGATACCAGAGATAG
Seq A exon
AG
Seq C2 exon
ACAAAAGACTGTTGAAAATGCTGAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGGAAAGGGAAGCAAGAAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-4-5,4-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCGTTTCTTCCTTCCATGA
R:
TCCCTCTCGGCTCTTCTTCAG
Band lengths:
95-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: