MmuALTA0017802-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59646769-59699427:+
Coord C1 exon
chr2:59646769-59646872
Coord A exon
chr2:59699348-59699349
Coord C2 exon
chr2:59699350-59699427
Length
2 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
TCTTTTTCTTTTCTCCTTAGAGA
3' ss Score
11.19
Exon sequences
Seq C1 exon
GAGCTGACTGTTGGGCACAGAGGAAGGACAGGAGAGAGAGCTGAGACATAAGGACCACTGTACCGCGTTTCTTCCTTCCATGAATGAGAAGATACCAGAGATAG
Seq A exon
AG
Seq C2 exon
ACAAAAGACTGTTGAAAATGCTGAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGGAAAGGGAAGCAAGAAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-12-12,12-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCGTTTCTTCCTTCCATGA
R:
TCCCTCTCGGCTCTTCTTCAG
Band lengths:
95-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types