RnoALTA0039726-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45718577-45773514:+
Coord C1 exon
chr3:45718577-45718683
Coord A exon
chr3:45773435-45773436
Coord C2 exon
chr3:45773437-45773514
Length
2 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCCTTTCTTTTTCTCTCTAGAGA
3' ss Score
11.24
Exon sequences
Seq C1 exon
GAGCTGAGTGTTGGGCACGACGTACAGGAAAAGGACAGGAGAGAGAACTGAGACTTAAGGACCACCGCGCAGAGTTTCCTCTGTGAACGAGAAGATAACAGAGACAG
Seq A exon
AG
Seq C2 exon
ACAAAAGAGTGTTGAAAATGTTGAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGTAAAGGGAAGCAAGAAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-11-5,11-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.905
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGACTTAAGGACCACCGC
R:
CTCGGCTCTTCTTCAGCACAG
Band lengths:
108-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]