RnoEX0088520 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45718577-45800709:+
Coord C1 exon
chr3:45718577-45718683
Coord A exon
chr3:45773435-45773514
Coord C2 exon
chr3:45800521-45800709
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCTTTTTCTCTCTAGAGA
3' ss Score
11.24
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGCTGAGTGTTGGGCACGACGTACAGGAAAAGGACAGGAGAGAGAACTGAGACTTAAGGACCACCGCGCAGAGTTTCCTCTGTGAACGAGAAGATAACAGAGACAG
Seq A exon
AGACAAAAGAGTGTTGAAAATGTTGAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGTAAAGGGAAGCAAGAAGGAAGCAG
Seq C2 exon
GAGGTGACTTTGGCTCAGAGACGCCCACCTTGTCCTCCAGTGGTGACTCTCCTGTGAACAGTTTGTCCACAACAGAGGACACCTACCGTGTGAGCTTGGCCAAAGGGGTCTCCATGTCTCTTCCTTCATCACCTTTGCTGCCTCGACAATCTCACCTGACACAGTCAAGGGCGAACAAAAAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'11-9,'11-4,20-9
Average complexity
C3
Mappability confidence:
100%=92=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.905 C2=0.859
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGACGTACAGGAAAAGGA
R:
ACGGTAGGTGTCCTCTGTTGT
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]