HsaEX6016146 @ hg38
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:159001080-159097834:+
Coord C1 exon
chr2:159001080-159001189
Coord A exon
chr2:159065896-159065971
Coord C2 exon
chr2:159097637-159097834
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCTTTTCTCCTTAGAAA
3' ss Score
10.8
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGCTGACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAAGAGAAAATTGTGAACTAAGGCCCCCTGCCCCCTTTTCCTGGTGCATGTGAAGTTATCAAAAACAG
Seq A exon
AAACAAGTGTTGAAAATGTTAAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGGAAAGGGAGGCAAGAAGGAAGCAG
Seq C2 exon
GAAGTGACTTTGGTCCAGAGACTTCTCCAGTCCTGCACCTTGACCACAGTGCTGACTCTCCTGTGAGCAGTCTTCCCACAGCAGAGGACACCTATAGGGTGAGCTTGGCCAAAGGTGTCTCGATGTCTCTGCCTTCCTCACCTTTGCTGCCTCGACAGTCTCACTTGGTGCAATCAAGAGTGAACAAAAAATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-'16-21,'16-15,30-21
Average complexity
C1
Mappability confidence:
100%=100=89%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.978 C2=0.925
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTTCCTGGTGCATGTGA
R:
GCAAAGGTGAGGAAGGCAGAG
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains