BtaEX6009648 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37376349-37429750:-
Coord C1 exon
chr2:37429641-37429750
Coord A exon
chr2:37407095-37407174
Coord C2 exon
chr2:37376349-37376549
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCTCTTCTCTTTAGAAG
3' ss Score
9.65
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TTCTCGTTCCATCTTGCTGTAGTCGCCTGATCCAGAGGAACGTTCGGGGTTTCCCCCGAGTGAGACAGCTGCTCTCTGTTGCCAGCAAGTGGAGTCTGGGGTGAGGCAAG
Seq A exon
AAGCAAAGGAGTGTTGAAAATGTTAAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGGAAAGGGAAGCAAGAAGGAAACAG
Seq C2 exon
GAGGTGACTTTGGTCCAGAGACTTCCCCTCCAGTCCTGCCCCCTGGCCATGGCGGTGAGTTTTCTGTGAGCAGCCTTCCAGTGGCAGAGGATGCCTACAGGGTGAGCTTGGCTAAAGGCGTCTCCATGTCTCTGCCTTCATCACCTCTGCTGCCCCGACAGTCTCACTCTGTGCCGTCAAGGTCAACTAAAAAGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'9-9,'9-3,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.765
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTGCTGTAGTCGCCTG
R:
ACAGAAAACTCACCGCCATGG
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]