DreEX0077222 @ danRer10
Exon Skipping
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11906984-11962545:-
Coord C1 exon
chr6:11962328-11962545
Coord A exon
chr6:11937456-11937566
Coord C2 exon
chr6:11906984-11907205
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATAATTTTGTGCCTCTGCAGGAA
3' ss Score
10.02
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TTATATTTATTTTAAAAACTTGTGTAAGTATGACATGTTTCAGTCAGAGGTGGGAGGCGTGTTTATACTGCGCTGCCTGCTCTGATTGGCTGACTCGTCAGAGGGAGGAGTTGAAGGAGCGGGTTCCTTCACTCACGCCTTCACTCCAGTTGGAAAGTTGTACTGGCTAAGAAACGCGTGTGTAAGGACGACATTTAGCGGTATCTCAGTCAAAACAG
Seq A exon
GAACAAAGGACTGCAGTTCTTCACAGATCGAAGGTGGGAATTGAGCCATGTTTAAGGCAGTTCTGAAGAAGGGTCGAGAGGGAGGAGGACGAGCTAGCAAAAGAGATGCAG
Seq C2 exon
GCAGTCAGCCTCTGAGCCCCAGTTTCCATCAGAGGTTTGAAGAGCAGGGGATTGTGGGTGTTCAGGATCGGGGCAGTGTGCTTCTTCCAGTACAGCCGTATCCAGCAGAGGAGATGCTGAGGCCTAGTCTGACCAGAGGAGTGTCCGTCTCTCTACCCTCCTCCCCGCTGCTGCCTCCCAGACAACCATACCTGTCACCCGTCCGGACCAATAAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.864 C2=0.720
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACTCACGCCTTCACTCC
R:
GGGTAGAGAGACGGACACTCC
Band lengths:
250-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]