MmuEX0046244 @ mm10
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59646769-59724849:+
Coord C1 exon
chr2:59646769-59646872
Coord A exon
chr2:59699348-59699427
Coord C2 exon
chr2:59724661-59724849
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTTTTCTCCTTAGAGA
3' ss Score
11.19
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAGCTGACTGTTGGGCACAGAGGAAGGACAGGAGAGAGAGCTGAGACATAAGGACCACTGTACCGCGTTTCTTCCTTCCATGAATGAGAAGATACCAGAGATAG
Seq A exon
AGACAAAAGACTGTTGAAAATGCTGAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGGAAAGGGAAGCAAGAAGGAAGCAG
Seq C2 exon
GAGGTGACTTTGGCTCAGAGACGCCTGCCTTGTCCTCCAGTGGTGACTCTCCTGTGAACAGTTTGTCCACAACAGAGGACACTTATCGTGTGAGCTTGGCCAAAGGGGTCTCTATGTCTCTTCCTTCATCACCTTTGCTGCCTCGACAATCTCTCCTGACACAGTCAAGATCGAACAAAAAATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-'12-18,'12-11,25-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.938
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTGTACCGCGTTTCTTC
R:
ACATAGAGACCCCTTTGGCCA
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types