RnoEX0088521 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45766987-45773514:+
Coord C1 exon
chr3:45766987-45767087
Coord A exon
chr3:45770703-45770832
Coord C2 exon
chr3:45773435-45773514
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGAACTTTCCCCCAGGTC
3' ss Score
10.57
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
TGACACAAAGGACTGTGTCTGTCCCCAAAGACTTGATGTGCTAATGGAGAAATACCAAAAGGGAGCTCTTTGCTGATTAGTTTAACTTGGAGAGGCTTTTG
Seq A exon
GTCAGCTGTCACGAGAGAGTGGGAACCTAGGAGAAAAGCTTACAGTAGATATTTGATAGCTTCTTAATACCCAACACGGCTGACACAGAAGATGTGACTATCCTAAGGAACAGCTGAGCTCCCGACACAG
Seq C2 exon
AGACAAAAGAGTGTTGAAAATGTTGAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGTAAAGGGAAGCAAGAAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'18-4,'18-3,19-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.905
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGTGTCTGTCCCCAAAG
R:
CTGCTTCCTTCTTGCTTCCCT
Band lengths:
172-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]