BtaALTA0029522-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37407095-37429750:-
Coord C1 exon
chr2:37429641-37429750
Coord A exon
chr2:37407172-37407174
Coord C2 exon
chr2:37407095-37407171
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCCCCTCCTCTTCTCTTTAGAAG
3' ss Score
9.65
Exon sequences
Seq C1 exon
TTCTCGTTCCATCTTGCTGTAGTCGCCTGATCCAGAGGAACGTTCGGGGTTTCCCCCGAGTGAGACAGCTGCTCTCTGTTGCCAGCAAGTGGAGTCTGGGGTGAGGCAAG
Seq A exon
AAG
Seq C2 exon
CAAAGGAGTGTTGAAAATGTTAAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGGAAAGGGAAGCAAGAAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-9-4,9-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGACAGCTGCTCTCTGT
R:
CTCGGCTCTTCTTCAGCACAG
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development