MmuALTA0019225-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026670 | Uap1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:MGI Symbol;Acc:MGI:1334459]
Coordinates
chr1:172078127-172079590:-
Coord C1 exon
chr1:172079402-172079590
Coord A exon
chr1:172078175-172078177
Coord C2 exon
chr1:172078127-172078174
Length
3 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GCTTATTTATTCCTACATAGCAG
3' ss Score
4.43
Exon sequences
Seq C1 exon
GAAGTTTGTGGTGTATGAAGTATTACGGGAAGATGAGTTTTCCCCGCTCAAGAATGCAGACAGTCAGAACGGGAAGGACAACCCGACCACAGCAAGGCATGCTTTGATGTCCCTTCACCACTGCTGGGTCCTCAATGCCGGGGGACACTTCATAGATGAGAATGGCTCTCGCCTCCCAGCCATCCCCCG
Seq A exon
CAG
Seq C2 exon
TGCTACAAATGGAAAGTCAGAGGCCATCACAGCTGATGTCAATCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026670-16-13,16-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(14.7=100)
A:
NA
C2:
PF0170413=UDPGP=FE(3.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCGGGGGACACTTCATA
R:
ATCAGCTGTGATGGCCTCTGA
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: