HsaALTA0009193-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000117143 | UAP1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:12457]
Coordinates
chr1:162560113-162562572:+
Coord C1 exon
chr1:162560113-162560301
Coord A exon
chr1:162562522-162562524
Coord C2 exon
chr1:162562525-162562572
Length
3 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
CCTTATTTATTCCCACATAGCAG
3' ss Score
4.93
Exon sequences
Seq C1 exon
GAAGTTTGTGGTATATGAAGTATTGCGAGAAGATGAGTTTTCCCCACTAAAGAATGCTGATAGTCAGAATGGGAAAGACAACCCTACTACTGCAAGGCATGCTTTGATGTCCCTTCATCATTGCTGGGTCCTCAATGCAGGGGGCCATTTCATAGATGAAAATGGCTCTCGCCTTCCAGCAATTCCCCG
Seq A exon
CAG
Seq C2 exon
TGCTACAAATGGGAAGTCAGAGACCATCACAGCTGATGTCAATCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117143-14-16,14-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=NA C2=0.840
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(14.7=100)
A:
NA
C2:
PF0170413=UDPGP=FE(3.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGGGTCCTCAATGCAG
R:
TCAGCTGTGATGGTCTCTGACT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)