HsaINT0175983 @ hg19
Intron Retention
Gene
ENSG00000117143 | UAP1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:12457]
Coordinates
chr1:162560113-162567648:+
Coord C1 exon
chr1:162560113-162560301
Coord A exon
chr1:162560302-162567581
Coord C2 exon
chr1:162567582-162567648
Length
7280 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
ATACTTGTTTTTTTTCTTAGCTT
3' ss Score
7.37
Exon sequences
Seq C1 exon
GAAGTTTGTGGTATATGAAGTATTGCGAGAAGATGAGTTTTCCCCACTAAAGAATGCTGATAGTCAGAATGGGAAAGACAACCCTACTACTGCAAGGCATGCTTTGATGTCCCTTCATCATTGCTGGGTCCTCAATGCAGGGGGCCATTTCATAGATGAAAATGGCTCTCGCCTTCCAGCAATTCCCCG
Seq A exon
GTAAGTCAGTATCTTTTCTCTTTTGTATGAATCCTTTCTTGGACTTTTCCTCTTGGACTTCTCTCTCTCTCTCTCTCTCTGTATTCCTAGATCTTTTTTAAAAAGCAAAGTTTTGATGTGTGAACAGTTCCTGATGTGAAATAACAGTAGCTTTGCCTATTATAAAGAGAATGATTGTTTTACTTTCTTGTGAAGAGGAGTCTTTCAGATCTCTCTTTTTTTAATTTTTATTTTTTGGAAACATTGCCACCATGACAGCAAAAAGACTTCTACTAAATAATGATCAGAAGATTTTTTTTTTTTTGGTGTGCCATATGGTTAAAGCCCATCAGTAACACACTATACCACAGGGCAAGTCCTTCAGCCACAGAGGATTGTTTGTTGTTGCCCATATATCTGTGGCCTCACCACTATTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTTTGTCACCAGGTTGGAGTGCAGTGGCACAGTCTCAGCTCACTGCAGCCTCCACCTCCCGTGTTCAAATCGATTCTCCTACCTCAGCCTCCCAAGTAGCAGGGACTATACAGGCACATGCCACCACACCCAGCTAATTTTTATATTTTTAGTAGAGATGGGCTTTCACTATGTTGACCAGAGTGCTCTCGATCTCCTGACCTTGTGATCCACCCGCCTTGGCCTCCCAAAATGCTGGGATTACAGGTGTGAGCCACTGGGCCCGGCTGACCTCACTACTGTTAATAGTACTGTCTGTGAGACCCACTCATAGCTCCACCACCCCCAGGCTACCTACAAATTGTAGTCCAATGGCAGTTTTCACTGTAGCACTTTCAGGTCACTGAGGAAGGTGTCTAGAAGAGAAGTAAATGTCAGTTACATTCACTGATACTTAGAAATGGCTTTGGTTTTGAGAAGTTAAAAAAAGAAGGTATTGTAGTTATTTAAATCCAAGATAAAGTACTTTTCAGCTAAATCTGTTTTTTTGTTTGTTTGTTTGTTTTTTGGAGACAGTTTCACTCTTGTCACCCAGGCTGGAGTGCAATGGCACAATCTCTGCCCACTGCAACCTCTGCCTCCTGGGTTCATGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGGTTACACTCGCCTGCCATAAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGATTTCACCATGTTGGTCAGGCTAGTCCCGAAATCCTGACCTCAGGTGATCCGCCCGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCGCCATGTCTGGCCAATCTTTTTTTTTTTTTAAGACAAGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCTTCACTTCCTGGGCTTAAACAATACACCCGCCTTGGCCACCCAAAGTGCTGGGATTACAGGTGTGAGCTATTGTGCTCAGCCTAAATCTTGTATTTTATGATGAAACCTTCACTGGCACCTAGAATTTCCCTTTCTGAATCATCTGGTATATCCGTACTTATGTAAAAAGCATTCTGGCATTTAATTTATATTCCTAACGGATAAGATGGCTGGCTGCAAGAATGCCTCAATAAATGGTAAAATATTGGGCTGGACACGGTGGTTTGTGCCTGTAATCCCAGTATTTTGGGAGACTGAGGCAGGCAGATTACCTGAGGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAATATACAAAATTAGCTGGGCATGGTAGCGCATGCCTGTATCCCAGCTACTTGGGTGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGGAGAAGTTTCAGTGAGCTGAGACTGTACCACTGCACTCCGGCCTGGGTGACAGAGTGAGACTCCATCTCAAGAAAAATAATAAAATGTTAGAGAACACTGAACATTGGAATTTACTGGTACATAACTGGTTTTACAAGAAGCAGCAGTGGTAGCTTTCATCTCCCAGTCCAAGGCCACTTTTGGGCTCTGTATTGTCAACAAGCTTGCTCTTGGCATGTCACATTGTCCTCATGTTTCATCTTTGGCCATTGAGTTTTATTTTTATTTTTTTACCCCCTTTTGGTCTCTTGGGACGAATTTATGATTTACCATAAATACATACCATTCAATCAAGTATATTTTGCAACTCCATTTCATTGTTATTGTTTGATTTGCTTCCATTCCCATTAATCCTTATTTATTCCCACATAGCAGTGCTACAAATGGGAAGTCAGAGACCATCACAGCTGATGTCAATCACAAGTAAATATACCAGCCTGCCTACAGTGCATGGTGATGGGGCTGTGCTTCCCTCCATACTAACTGGCATCGTAGTTTAGTGCTCTGCCTTTTGGGGGTCTGGAGGGAGGATGGTTGAAACTTTGGTGTGGGTGCACTGCTTACTTGGTGGCAGGTATCTCTCTGGATGACACTAACTCAGAATCTTGTTGCATGCTGGAAATGGAGAGCATGCTTTACTAAAGAATCTGACCACAGGTGTTAGAGCTGGAACTGACAGATTTTCAGATGATAGGTAAGATCCAGAGCAGGTTACAGGTCAGGGAGAACACATTTTGCACCTTTAACATAAGCTTATACGGGGTTAAAAATACCATTCTGAAGATGTGTCTTGTGGAATTGGGTGTATGCTCTCAGTATACAGGCTGATTGTTCCTGTCATATTTGATGGCCCTTAATATGGAGAAAACTGTTCTGTTGATTTATTCTCACACTAACAGCTCTCCTTTTTGGTCACTGCATTAATTTTAGTCAGTTACTTTCTTGCTTCTAAAGAATCTTTTTATCTTAATGGCAGATCATTTTTAGTTAGAAGTAACACATATCCTCTCCCATCTGGGTACTGACAGAGTTTGGAAAAGCCATTATCTTTATAGTTTAAGAGACAGCTTGATGTTATTGTTACACTTTGAAAGTTAAAGTTTTTAAGGTTGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATTACCTGAGGTCAGGAGTTCGAGACTAGCCTGGCAAACATGGCGAAACCTCATCTCTACTAAAAATACAAAAATTAGCTGGTGTGGTCATGCACGCTTGTAGTCCCAGCTACTCAGGAGGCTCAGGTGGGAGAATCACTTGAGCCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGCACCATTGCACTCCAGCCTTGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAGAAAGAAAGAAAAAGTTTTTAAGGTAATTTGGGAAATATATGCAGGGCAAAAGATCTGGAGATGGAAGTTATCTCAGAAATAGAGTAGCACCTTCATCAGTGTCACCCACGTGCTTTTTCCTGTCTGTGCCATTCCTCTGCCCAGACAAATTCCTGTGAGTGTCAGTGTTTCTGGGATGTGATTCTGTAAACAAGGAAGTGGACTCAAAGATCTGATCAATTTCTTATAGGTGCTGTAGATCAGCGGTCTCCAACCTATTTTGGCACCAGGGACTGGCTTTGTGGAAGACAATTTTTCCACAGACTTGGGGTGGTGAGGGTGGTTTCAGGATGATTCAAGCATGTTACATTTATAGTACACTTTATTTCTATTATTATTACATTGTAATGAAATAATTATACAACTCACTGTAATGTATAGAATCAGTGGGAGCCCTGAGCTTGTTTTCCTGCACCTAGGTGGTCCCATTTGGGGATGATGGGAGACATCATCAGGCATTAGACTCTCATAAGGAGCACACAACCTAGATCCCTTACATGGGCAGTTCACGATAGTGTTCACATTCTTAAGAGAATCTGTTGCGGCCACTGATCTGACAGGAGGTGGAGCTCAGGCAGTAATGTGAGTGGTGGGGAGCATCTGTAAATACAGATGAAGCTTTACTCACTTGCCCACTGCTCATCTCCTGGTGTGTGATCCAGGTCCTAACAGGCCACAGAGTAGTACCGGTCCATGGCCCAGGGGTTGGGGACCGCTGCCATAGATGACTGTTGTCTCTCCTGCCTTGGGAACTGGGATGCAGAGCCCTTTATCACTTTCTGTCTCATCCACCATTTTTAATATATGGAAGCAAGCTGCTTTTATATTTAAGAAATAAAACTTTGATTAAATTTCTTTGTCATTGAACCATAGCTTTTAACCTAACAGTGTAATAGATTGTTAATTATATAACTGAAGACAGCATCTAGCTATCTTAGTTAAGATACAAAAAGCTTTAAACATTATTCTTACTCTTTTGTTTAATATCCCCCATCGCCCAGTTTACTTCATTTTAGCCATTTATAGAATAATTAAAGTGAAATCAAAGTTTGGCTTTAAATGATACCATGCACTGAAAAAGAGTTCCTGCGTAATCCTTAGCACCAAAGGATGACCTTACACAGCTGAAGAACATCATGTAATTGTGAGAGATGAAAAGGAAGTATATTATGTAAAAGAGGGAAGAAGCAACTAGGAGGTATTCTGAAAGAATGGAAACAACCATGCTGAGTTTTGACTCGATATTATTTTTATTTCTCACCTTAATGCTTACTGAATAGTGTTAGCTACCAAAAGGATGCATGGCTAAAGAATTGTGGGGCAGTAGGTTTATTGGGCTAATTTGCTTATATCCTGAGATTTTACATTTGGTGATGGTAGCTTCTGTTTTCCCTCCTTCAGGGCATCCAATTTTGTTTACTGAAGTTCACTCCTTAGTTTCTTGGGGTATCTTTGTGGTAGTAGAATGGAAGTTACATATTCAGGCCAGCTGTATATGTGTTTCTTGGGTTCACAACCACCTTCTGTTCCTGCTACACTGAATCCTTCAGGGGTTTAGGTGGGACTGGGCTATATACATCTTAATGGGGTGGGCCCTCATTTTTTCCTTTTTTTTTCCTCGGCATGCCTACTCAAGATTCATTTGGTTTTGTATGACTTTGAGTTGCCCCAGAAGGTCTGGACTAGACCTCTTGAGCTCTTGTGGTAGAATCTGGCATGTATGTAGAGAGGTGTGTGCCCCACTATGCCTCCTCTTTTCCCTTCATTAGTTTGTCATCATTTTCATAGTGTTATTTGTTCAGACAACAAGCATTCGTAGGCCTGCTCATAGGTTTATAGGTGCTATTAGTATCCTAGGTGCTGAAGTATCTTATACAAGAGAAATAAGTCACTTCTTACAGACTACTGGGATGTTCAAGATGCACATACATAAAAGTTAAGTAACATTTTCAGGCAGTATGTGATTATGTGCTAAATGTGTGCTATAGCAATAATTACTCTGGGAGGCAGTGACTTAGCAGGTGTCTAATACATTTATTTTTTATTTATTATTGTTATTATTATTTTTGAGACAGTGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGAGCGATCTCAGCTCATTGCAACCTTCACCTCCTGGGCTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGATGCTCGCCTCCAAGCCCAGCTAATTTTTTGTATTGTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAATTCCTGACCTCAAGTGATCTGCCCACCTTGGCCTCTCAAAGTGCTGAGATTATAGGCATGAGCCACCACACCCGGCCACATTAATTAAATTAATTAATTAATGTATTTATTTATTTTCGAGACAGAGTCTCGCTCTGTCACCCCGGCTAGAGTGCAATGGTGCAATCTCGGCTCACTGCAACCTCTGCCTCTTGGGTTCTAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGCTTTACAGGTACGCGCCACCACACCCGGCTAATTTTGTATTTTTATTAGAGACAGGGTTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACCGCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGCCACATTTATTTTTTATATGAATAAATGGATGGAGACAATCACTATGAAATGCAGTGGTCAAGAGAAGATTGGGGCTTGAGCCAAATCTTGGAGGATGAGTATGGTTTTTATGGGACCATAGTTGAGAATGACTTGGAATAATCCAAAGAGTGTGACTGATCTGGTTTGAGTGGAGAGTCTCAGGATAAGTAAGGTGAAGTAGGATAGAGAGTGCTTTGAATGCTAGAGAAAGGTTGACCTGTAGCTAAACTCAGAAGCCCTCTGATTTTTATTGACTCCAGCAAAGTTTGAGACTACGTACTTGGGGAAAGCACAGAAAGAGCTATGGTTTGACAAGAGACTAATATTTTTGTGCCCTGTGTCTTATTGGTAAGATTCTTGAAGTGGCAAATAACAAAGAGGTCTAATGACTGCAAACTCATTGACTATTTATTGACTTTTGTGTTAGATAACTTAGAAATTCAGAATTGCTGTAAATGTTAGGTTGTGACCTAGATGAAACAAATAGGGACTTTGACCTTGCCTTCGCTTGAGTGCATTCTGCCTTAGCTCTTTAAAAAGGGACTTTTGGTAACAGAGAAGTACTTTGAAACATATTGAATAAATTAGCTCAGCTAATCTAGGACATTTGGGTTGTACAGAAAAAACATGTACTGGGAAATAATTTAACTGTCTGATAGAACTTTCTGCAGTGAAGGAAATGTTGCATATCTTTGTTGTCCAGTTTTGTAGTCATTGGCCATTCATGGCTTCTGAACACTCGAAGTGTGATTATTATGACTGAGAAACTGAATTTTAAATTTTAAATTAGTTTTAAAAATTTTAATTAAATTTAAGTAGCCCTGTGCAGCTATTGGCTTCTGTATTGGATAGTACAGCTTTAGAATGTTTGTCAACATTAATAGTACCAAGGTAGTGGTGAAGATTAAAATGCAATATGAAGGCTTCAGAGCACCTAGCATTGGGCTTGGCATATAGTATATACCTAGTAAGTAGTCACCTTTTTATCAAATTGAAACTTGGAAATGGTTAAAAATGAGATGTATGTAAGGGGACAGTGTGTAAAAACTAGTGAAGTGCTGTAAAGAGCTACCAGTAATTATTGGCACTTGCCCCAAATAGTGTCCTTCTGACCTGAGAATTTCATATTAACTTAATCCTCAGGGAATTTAGTGATCATCAGGGTAGCATCTATTCCATTTGTTTAACTGGAAGAATTATCTGCAAGCTTCTCAGAGGAAAGTTATGGTTTGTACTTTTGCTCTGGCAAGTAACATGGGAAGCAAAGTCTTTAACACATACTTGTTTTTTTTCTTAG
Seq C2 exon
CTTGAAGGATGCCAATGATGTACCAATCCAATGTGAAATCTCTCCTCTTATCTCCTATGCTGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117143-UAP1:NM_003115:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(14.7=100)
A:
NA
C2:
PF0170413=UDPGP=PD(3.3=60.9)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)