MmuINT0168756 @ mm9
Intron Retention
Gene
ENSMUSG00000026670 | Uap1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:MGI Symbol;Acc:MGI:1334459]
Coordinates
chr1:172073528-172078174:-
Coord C1 exon
chr1:172078127-172078174
Coord A exon
chr1:172073595-172078126
Coord C2 exon
chr1:172073528-172073594
Length
4532 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAT
5' ss Score
4.44
3' ss Seq
GCCTATGTCTTTTTCCTTAGCTT
3' ss Score
8.81
Exon sequences
Seq C1 exon
TGCTACAAATGGAAAGTCAGAGGCCATCACAGCTGATGTCAATCACAA
Seq A exon
GTAAATATACCAGCCTGCCTGCAGTGCATGGTGACGGGGCTGTGCTTCTCTCCGTACTAACTGGCATCGTAGTTTAGTGTTCTGCCTTTGGGGTTCTGGAGGGAGGAGGACTGAAGCTCTGGTGTGTGGGTGCACTGCTTTCCTGGTGGCAGGTCTCTATCTGGGTAACACTAACTCAGACTCTCTGTGCATGCAGGAAGTGGGGAGCATGCTTGACTAAAGAATCTGGGCGTGGCTGTTTGAGCCCATCATGCTGAGGAGAGCTGTGGGTTCCAGGGCAGGCTCCTGGCAGGGAGAACAAAGTTGGCTGTATACTGTGTAGCATAAGCGAGATGAAAACAGCATTCTGCAAATGTATTTTACTCAGTTGAATATATGTGCTCTCAGGATGGAGTTTGACTACTACTGATATTCATTCAACAGCTGCATATGGAGAAGACATCTCTCATTTTATTTGCACACTTTTTGGCTTTGTTTTTATTTTGAGAAAGGGTCTTGGTTTTCAGCCAAGTCTGGCCTGGAACTCTGTTTTCCTATGTATCTTCAAGTGCAGGGATTATAGCCACATACCACCATATATGGTTAGGCCACTGTTTTCATCATTGAGTTATTTAGATTCTAAAGTATATATCTTTTTGTTTTCCTTTATTAGCAGGCCATTTTATAGCTAGAACTAACACAGCCTCTCTCACCTGGTTAGTGGCAAGATTTTTTTTATTGTGGGTTTTATATTATTTTTGCTATTATTTTTATAGTTAAAGGTCAGCTGATGTTTTTGCTGCCCCCCCTCCCTTTTTAAAAAAGATTTATTTATTTGTTATATGTAAGTACACTGTAGCTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATGACAGATGGTTGCTGGGACTTGAACTCAGGACCTTCAGAGGAGCAGTCAATGCTCTTAACCACTAAGCCATCTCTCCAGCCTTTTTGCTGCCCTTTTAAAAGTTAGTAAATTTAGGGGCTGAAGAGATGGCTCAATGGTTAAGAGCACTGATTGATCTTTAAAAGAACCCAGGTTCAATTCTCAGCACCTACATGGCAGCTCACAACTATCTGTAACTCTAGTTTAGGAGATCTTACACACACACACACACACACACACACATACACACACACACACACACATACACACATATCCCAATAATAAATAAACATTTAAAAAATGAAATGGAAATATTTCATGTAAGACAGAGAAAAAGTAAGTTGGAGATACTTTGAAGAATAAAAGCAAGGATGTGGAGTCTTGACAAAAGTGACTTTTTTATTTTTCATCTTAATTTACTGTTAACTACTAAAACTTTCCTTGGTGATGGGATTAGGGGCCAGCTGGCTATTGGGCCATTTCATCAGTAAGCTGAGTGTCTAGGTTTGGTGATGACCGTCCTGTCTTCTCTTCTTCAGGGCCTCTGAATTTGCCTATTGAAGTCTGTTTTCTTAGTTCCTTCCTGTTTGGATTCAAGGACTATCACTTTGGGGCAGGAACAGACGTTACATATTCAGACCAGTTTTAGATTTGTTTCTTGGGTTCAAAACCATACTGTCATCATAGTGACTGAATCCTTCAGGGGATTAACTAACCTGGGCTCTGTGCGTCTTACCAATGTGCTAGGCCTTCATTTTCCATATTTGGTTTAGTCGGACTGAGCTTCTCCGGAGGGGTCAGAAGGTCCTTGTCATAAGAATATGGCAGACTATGTGGGGAGACCTTAGCTTCTTTTCTTGTCACTAGACTGTCATTTCCCTTTGGAATTGGTTTAGTCATTTCTCTAGCAAGCTCCCAAGCCTGCAGCTGCAGTTAGTATCCACACGACGCAGGAGAGACTAGTCATTCCTAACAGCCTACTGGGATTCAAGGCACAGCCATAAAAATTAAGAGATGTTGTCAGGCACTGTGAGACTATTCTGACATGTGGCATGCGTAATATTTATTCTTGGAGACAGGGATGTGCAGGCATCTAATACGTTTATCAGTGAACAGAAGCAGTCATGAAATGAGGAGGGGGGGAATGTTGGAGCTGGTGCTAAAACTTGGAGGGTGGGTATGGTGTCTTTAGTCAGAGGGGCTGTGATTGGGATAACTTGGACTATTCCCAAGACTGGTCTCCATTACTATATAGCGACTCATGAGTGAAGCAGCAGGCTGCGGGCATTGGAACAGAACATAGAGTGCCTTGAGTGGACTCAGGTGACCTACTTAGTAACACTGGCCTCTGACTGGCTTTAGGAGCCATTCTTGGAAGAGGAGAGACCATAGCTTGAGGCTACAAAGAGGCTGGGTTTTGTGTGTGCCATCTACTTGTTGCTAAGACTGTTTCTGTTTTTAAGAGAAGTTCGTGGTCAAGTGCTGGGAATACAGTCATGTTCCATCTGCCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTTCCCTTCCTCCCTCCCTCCTTCTGCCCCTCCCTCCTTTCTTCCCTTCCTTCCTTTCTCTTTTAAAAAATCATTTTTTCAAATTATTTTATCTTTTAAAAATATTATTGTATCACTTTCCCCTTCTCTTTCCTCTCTTCAACCCCCTTTGGTTTCTGTCAAAATCATGGTCTCTTGTTGATGTAGGAATGTATGTATATATGTATGCATGTATTTATGTTTGTATCTGTATATATGCACATCTATGTAAATTTACACACACACAGGTGTAAGTACCTAAATCTGTAAATCAGCCTGCTCTGTCCTAGTCCCTTTAGTGTTACTTGTGTGTCTATAATTTTAGAGCAGCCTGCTCCGTCCTAGTCCCTTTAGTGTTATTTGTGTGTCTATAATTTTAGAGCTGACCACTTGGTATTGGATCACCAATTAGAGGGCTCATTCCTGGGAAGACTGTTTCTCCTGCTCCCAGCATTCCTTTGTTGCCTGTAATTCTTTGTCTGGGGGTGGAATCACGTGAGAGTTCTCCCTTCCATGTTAGCATGGCTACTGATGTTGTCCTTGTTCAGGCAGCCATATTGTTCAGGTGTCACGGGTGAAGCTTCCTTGTCATTTTCAGGAGACACAGTATCACAGTTTTCCTGATTCTCTGGAGTTTAAAGTCTGTCCGCTTCCTCTCTGAGATGTTCCCTGAGCCTTTGCTACAGGAGTTGTACATGCATTCATCGGGGCAGGGCACCCACATGCCCTTTTTCTCTGTGTTTTGACTAGTTGTTGCAAAGAGAGGTTGTTTGGGTTTTGTTTTTGTTTTTGAGAGAGAGATAAGAGCTATGCTAATCTTTTAGTATGAGGATGGATATTTAGAATATAGTTAGAAAGATGGCCAGCGTTGCCTCTCCTGAGTTCCATGACTTTACCAACCTTGGATGATTGACTAAACTGAGTTCCAGGTATGGTTGACCCCTGCTAAGTGGACTTTCAGTCCGATAAAGAGTGCCATTATTGTACCCTTAGATAGTCAGAGCTGGCCTTGAACTCACTATGTAGACAAGGAAGGCCTTGGACTTCTGGTCCTCCTGCCTCTGACTCCTGAGTTCCGGGGCTACAAACATCCAGCACCATGCATGATTGACGCAGTGCTGGGGATGGAACCCAGAGCCTCATGCCTGCTAGGCAAGCAGTCTACACACTGATCTGCATTCTGAATCTACTGTTGGCAAGGTTTTTGAGATCGCACCGTTCTCCAAGGACTGACTATAAGGACAACACTATTTACTGACTGTTGTTAGACTGTCTGGACATTCAGAATTCCAAGTATCTGTAAAGTATCAGATTGTGACCTAGAGTTGGCAAGCGGTGACTGTGCCTTGTCTTTGCTTGGTATTTTCTGCCCCGGTGCTTTAGAAAGGCACCGTTGGTAACACAGTGCTTTGAGACATAGTCATGAATAAGCTAATACAAGAGACTTAGATTATATAAGAAAATCTTGTACTGGGAAATCATGGAACAAGGAACAAAATGTTCTTTATCTGTGCTGTCCAACGTGGTTGTCATTGCGTCGCTGTGGTTCCTGAGCACTGGAATGTGATTGTTCCGACCAAGAAGCTGAAGGTTGAAAATTTCAGTTTAAGTAGCGCTTTGGTTACTGTGTGGACAATGCAACACTAGAGTGCTCCTCTACGATAGGATTTGACTTGCAAGGTTGTGCTTTGTGAAAATTCAAATAGACGTGAAGGAGTCAAGAGGCCTATCAGTGGGCCTGGCACACAGTGCATGTCTGTCTAATCAATAGTCCCTTTTTAATGAACTTCCTGAGATTGGAAATGAGATTGTGTGAGAGGGTAGTATATAAAGAGCTGGAGGAGTAATAGGGACTTGTTCGAGTAGTTGTGTCTGATGATGATAATGTGTTAACTTTCAGGACATTTATTGTAGAGGAGGCTCCAGGGTAGGCTCCATTCTTTAACTAGAATTGTGTTACCTGCAAGCTCCCCAGAGGAAGTCTGTGGTCTGTATTTTCATACTAGCAAACATCATGGCAAGCAGAATCTTTTAACATGCCTATGTCTTTTTCCTTAG
Seq C2 exon
CTTGAAAGATGCCAATGATGTACCGATCCAGTGTGAAATCTCTCCCCTCATCTCTTATGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026670-Uap1:NM_133806:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(3.7=100)
A:
NA
C2:
PF0170413=UDPGP=PD(3.3=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: