BtaALTA0031906-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000010206 | UAP1
Description
Bos taurus UDP-N-acteylglucosamine pyrophosphorylase 1 (UAP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046404]
Coordinates
chr3:6905539-6906889:-
Coord C1 exon
chr3:6906701-6906889
Coord A exon
chr3:6905587-6905589
Coord C2 exon
chr3:6905539-6905586
Length
3 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
GCTTATTTATTCCTACATAGCAG
3' ss Score
4.43
Exon sequences
Seq C1 exon
GAAGTTTGTGGTATATGAAGTATTACGGGAAGATGAGTTTTCCCCGCTGAAGAATGCAGACAGTCAGAATGGGAAGGACAACCCTACTACTGCAAGGCATGCTTTGATGTCCCTCCATCATTGCTGGGTCCTCAATGCAGGGGGCCACTTCATAGATGAAAATGGCTCTCGCCTCCCAGCAATTCCCCG
Seq A exon
CAG
Seq C2 exon
TGCTACACATGGAAAGTCAGAGGCCATCACAGCTGATGTCAATCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010206-17-14,17-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(14.7=100)
A:
NA
C2:
PF0170413=UDPGP=FE(4.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGGGTCCTCAATGCAG
R:
ATCAGCTGTGATGGCCTCTGA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development