BtaEX0038729 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010206 | UAP1
Description
Bos taurus UDP-N-acteylglucosamine pyrophosphorylase 1 (UAP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046404]
Coordinates
chr3:6900267-6906889:-
Coord C1 exon
chr3:6906701-6906889
Coord A exon
chr3:6901864-6901930
Coord C2 exon
chr3:6900267-6900849
Length
67 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGATTTTTTTCTTAGCTT
3' ss Score
7.14
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAAGTTTGTGGTATATGAAGTATTACGGGAAGATGAGTTTTCCCCGCTGAAGAATGCAGACAGTCAGAATGGGAAGGACAACCCTACTACTGCAAGGCATGCTTTGATGTCCCTCCATCATTGCTGGGTCCTCAATGCAGGGGGCCACTTCATAGATGAAAATGGCTCTCGCCTCCCAGCAATTCCCCG
Seq A exon
CTTGAAGGATGCCAATGATGTGCCAATCCAGTGTGAAATCTCTCCTCTTATCTCCTATGCTGGAGAA
Seq C2 exon
GGACTAGAAAGTTATGTGGCAGATAAAGAATTTCATGCACCTTTAATCATTGATGAGAATGGAGTCCATGAGCTGGTGAAGAATGGTATATGAGCCAGATGCTAAATAAGTTCCACCACAATAAGAATAGCTTTTATTTTTGATAGACTGACTGTGAACCCACAGGACCTCTCCTGGAATACTCATGTTTGAATATACACAGGCTTTCATGTTGCTTGTTGAACTCTTGTAACTACTACATACTTCATAAGATCCAGATGACTGAACTTCAGAAAGCGTTTTTATGATTCACAGCTGATTGAAGGTCTTATTTATATTTTTCAATTGTATTTTTTTTCCAAGCTAAGGAAAACATTGGCCATCTTGGAAATTTCTTACAACATAAGTATAGTCAGGATGTTCAACATCACTTTACTTGGAGCTGGAAGCATTTGTTTTGAACTTGTACATAGTAATAATATGTCATTGTACATGTCAAAAGGTTTCTATGGTACTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010206_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(14.7=100)
A:
PF0170413=UDPGP=PD(0.5=8.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCTTTGATGTCCCTCCA
R:
CAGCTCATGGACTCCATTCTCA
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development