HsaEX6034567 @ hg19
Exon Skipping
Gene
ENSG00000117143 | UAP1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:12457]
Coordinates
chr1:162562522-162569627:+
Coord C1 exon
chr1:162562522-162562572
Coord A exon
chr1:162567582-162567648
Coord C2 exon
chr1:162569061-162569627
Length
67 bp
Sequences
Splice sites
3' ss Seq
ATACTTGTTTTTTTTCTTAGCTT
3' ss Score
7.37
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CAGTGCTACAAATGGGAAGTCAGAGACCATCACAGCTGATGTCAATCACAA
Seq A exon
CTTGAAGGATGCCAATGATGTACCAATCCAATGTGAAATCTCTCCTCTTATCTCCTATGCTGGAGAA
Seq C2 exon
GGATTAGAAAGTTATGTGGCAGATAAAGAATTCCATGCACCTCTAATCATCGATGAGAATGGAGTTCATGAGCTGGTGAAAAATGGTATTTGAACCAGATACCAAGTTTTGTTTGCCACGATAGGAATAGCTTTTATTTTTGATAGACCAACTGTGAACCTACAAGACGTCTTGGACAACTGAAGTTTAAATATCCACAGGGTTTTATTTTGCTTGTTGAACTCTTAGAGCTATTGCAAACTTCCCAAGATCCAGATGACTGAATTTCAGATAGCATTTTTATGATTCCCAACTCATTGAAGGTCTTATTTATATAATTTTTTCCAAGCCAAGGAGACCATTGGCCATCCAGGAAATTTCGTACAGCTGAAATATAGGCAGGATGTTCAACATCAGTTTACTTGCAGCTGGAAGCATTTGTTTTTGAAGTTGTACATAGTAATAATATGTCATTGTACATGTTGAAAGGTTTCTATGGTACTAAAAGTTTGTTTTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117143-'15-20,'15-19,17-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(4.0=100)
A:
PF0170413=UDPGP=PD(3.3=60.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAGTCAGAGACCATCACA
R:
AGCTATTCCTATCGTGGCAAACA
Band lengths:
171-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)