MmuEX6029069 @ mm10
Exon Skipping
Gene
ENSMUSG00000026670 | Uap1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:MGI Symbol;Acc:MGI:1334459]
Coordinates
chr1:170141938-170148046:-
Coord C1 exon
chr1:170147996-170148046
Coord A exon
chr1:170143397-170143463
Coord C2 exon
chr1:170141938-170142572
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCCTATGTCTTTTTCCTTAGCTT
3' ss Score
8.81
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CAGTGCTACAAATGGAAAGTCAGAGGCCATCACAGCTGATGTCAATCACAA
Seq A exon
CTTGAAAGATGCCAATGATGTACCGATCCAGTGTGAAATCTCTCCCCTCATCTCTTATGCTGGAGAG
Seq C2 exon
GGCCTTGAAGGTTATGTGGCAGATAAAGAGTTCCATGCACCGCTAATCATCGATGAGAATGGAGTTCATGAGCTGGTGAAAAATGGCATATAAATCCTAACGGGCCACATAGGGAGCCGTTGTTTTGGTAGATCAATTGTGAACCTGTGGGACCTGTCCTGGACAGCTGAAGTTTGGACGTGCATCGAGTCTCATTCGCTTGCTAGTGTCTGCTAAGCAACACAGACTTCCCAGACCCAGATGACTGGAGTTCATTTTTAAAAGCATTTTTTTTTTCTTTTTTGTGATTCTCAACTCTCTGAAGGTCTTATTTATATTTTTTAACTATATAAGTTCTTCCAAGCCAAGGCTCATATTGGCCACCCAGGAAACTTCGTCAGCTTGACTCTGGTTGGATGTTCAGCATGACTTCACTTGAAGCTGGAAGCATTTGTTTTTGAAGTTGTACATATTGATAAGTCAGCGTATGTGTCAGAGGTTTCTATGGTACTAAAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026670-'30-29,'30-27,33-29
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.614 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(3.7=100)
A:
PF0170413=UDPGP=PD(3.3=60.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTCAGAGGCCATCACAGC
R:
CTACCAAAACAACGGCTCCCT
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types