MmuEX6029069 @ mm9
Exon Skipping
Gene
ENSMUSG00000026670 | Uap1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:MGI Symbol;Acc:MGI:1334459]
Coordinates
chr1:172072069-172078177:-
Coord C1 exon
chr1:172078127-172078177
Coord A exon
chr1:172073528-172073594
Coord C2 exon
chr1:172072069-172072703
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCCTATGTCTTTTTCCTTAGCTT
3' ss Score
8.81
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CAGTGCTACAAATGGAAAGTCAGAGGCCATCACAGCTGATGTCAATCACAA
Seq A exon
CTTGAAAGATGCCAATGATGTACCGATCCAGTGTGAAATCTCTCCCCTCATCTCTTATGCTGGAGAG
Seq C2 exon
GGCCTTGAAGGTTATGTGGCAGATAAAGAGTTCCATGCACCGCTAATCATCGATGAGAATGGAGTTCATGAGCTGGTGAAAAATGGCATATAAATCCTAACGGGCCACATAGGGAGCCGTTGTTTTGGTAGATCAATTGTGAACCTGTGGGACCTGTCCTGGACAGCTGAAGTTTGGACGTGCATCGAGTCTCATTCGCTTGCTAGTGTCTGCTAAGCAACACAGACTTCCCAGACCCAGATGACTGGAGTTCATTTTTAAAAGCATTTTTTTTTTCTTTTTTGTGATTCTCAACTCTCTGAAGGTCTTATTTATATTTTTTAACTATATAAGTTCTTCCAAGCCAAGGCTCATATTGGCCACCCAGGAAACTTCGTCAGCTTGACTCTGGTTGGATGTTCAGCATGACTTCACTTGAAGCTGGAAGCATTTGTTTTTGAAGTTGTACATATTGATAAGTCAGCGTATGTGTCAGAGGTTTCTATGGTACTAAAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026670-'17-16,'17-15,18-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(3.7=100)
A:
PF0170413=UDPGP=PD(3.3=60.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTCAGAGGCCATCACAGC
R:
CTACCAAAACAACGGCTCCCT
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: