DreEX0082620 @ danRer10
Exon Skipping
Gene
ENSDARG00000052170 | uap1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1233]
Coordinates
chr6:35052811-35056658:-
Coord C1 exon
chr6:35056470-35056658
Coord A exon
chr6:35055410-35055476
Coord C2 exon
chr6:35052811-35053533
Length
67 bp
Sequences
Splice sites
3' ss Seq
AACCTTTTTTGCCATCACAGTCT
3' ss Score
5.11
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AAAATTTGTGGTTTATGAAGTTCTGAGAGAAGACGAGTTTTCTCCACTGAAGAATGCAGACAGTCAGGATGGGAAGGACAATCCCACTACAGCCCGTCATGCTCTCATGTCTCTGCATCACCGCTGGATCCTAAATGCTGGAGGACATTTTGTAGATGAGAACGGGACCCACATACCTGCTATACCCAG
Seq A exon
TCTGAAGGATGGAACAGATCTGCCAATCAAATGTGAGATCTCTCCTCTTGTGTCCTATGGTGGTGAG
Seq C2 exon
GGTTTGGAGCATCTTGTGAATGAAAAAGTCTTCCAGCCGACTCTGATCATCAATGAGAGCGGCGTCCACGAGCTTGTGAAGAATGGCCTGTGAAGCTGGAGCTACTGCACTTGAAACCAAAAAAATGAAGACTCTTGATCTCTTTATCATCTCCATTTTTCAACTAGGGTGAAGGAAAGCATGAAATTCTAGTGCAATAAAATGAAGGAAGGAGGGGGCCAGAAGGCTAAACACAATCAAACCGTTTTATGATCAAACTATTTATTTTGTGAAGACTTATTTTTATATCAATATCTAGTGCTTTTTTTTCTACAACCGGTACTTGGGTATTAATTTATGAATAGATGTACAGCATCGCATCAAATCAAACTCAATGATATGAACTGTAGATAGCTTTAATGGACACCGTTAAGACTTTAGGCATTATTACTTAATCATTTCCATTCTTAAAACATATTGATAACTGTAAAAACTACTGTAAGAAAATGTTTGGTCTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052170_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(14.7=100)
A:
PF0170413=UDPGP=PD(4.4=82.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTGGATCCTAAATGCTGG
R:
CCAGCTTCACAGGCCATTCTT
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]