GgaEX1061481 @ galGal4
Exon Skipping
Gene
ENSGALG00000002725 | UAP1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12457]
Coordinates
chr8:3803239-3805213:-
Coord C1 exon
chr8:3805166-3805213
Coord A exon
chr8:3803748-3803814
Coord C2 exon
chr8:3803239-3803673
Length
67 bp
Sequences
Splice sites
3' ss Seq
ACTCTGGGTTCTCTCCGCAGTCT
3' ss Score
10.18
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CGTCACAAACGGAAGGTCAGATGCCGCCCCAGCTGATGGCAATGACAA
Seq A exon
TCTGAAGGATGCCAGCGACGTGCCCATCCAGTGTGAGATCTCCCCCCTTGTCTCCTACGGCGGGGAG
Seq C2 exon
GGGCTGGAGGAGCTGGTGAAGGAGCGGGAGTTCCGTGCACCTTTGGTCATCGATGAGGACGGGACCCACGAGCTGGTGCGCAACGGCATGTAGGCAGCACTGGGACCCGGCCGTGCTCAGCCATGGCATGGCTGCAGCCGTGCCTGGCTCCGGCGTGTCGTCTGCTTCTATTTATGTTTTAATTTAAAAACCAAACACTCGGTGGATGCCCCCGCTGTGAAGCGCAGCCTCGGTGCTGCTCTTTGCACTGTGGGCGTGTAAACCTGTACATACCAATGGTCAGCGTACCTGCAGAGGGGTTTTATGGTACAGGGCTGGGGTTAACCCTGGGTTTTTATTTTTCTCGAAGCGACGTGGCTATTTTTTTAATAGGATCCTTGTTACGGCCCACCCCCTTTTTGCTCATACTTTGTACATTGCACAACTGGAATTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002725_MULTIEX1-6/6=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.261 C2=0.433
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(3.9=100)
A:
PF0170413=UDPGP=PD(0.5=8.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACGGAAGGTCAGATGCC
R:
CCATGCCATGGCTGAGCAC
Band lengths:
175-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]