GgaEX1061481 @ galGal3
Exon Skipping
Gene
ENSGALG00000002725 | UAP1
Description
NA
Coordinates
chr8:3840327-3842753:-
Coord C1 exon
chr8:3842565-3842753
Coord A exon
chr8:3840860-3840926
Coord C2 exon
chr8:3840327-3840785
Length
67 bp
Sequences
Splice sites
3' ss Seq
ACTCTGGGTTCTCTCCGCAGTCT
3' ss Score
10.18
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAAGTTTGTGGTGTACGAGGTGCTGCGTGAGGATGAGTTCTCTCCTCTGAAGAATGCGGACAGCCAGAACGGCAAGGACAACCCCACCACGGCAAGGCACGCCCTGATGTCCCTGCACCACCGCTGGGTGCTCAACGCAGGGGGGCACTTCGTGGATGAGAATGGCACACGTCTCCCCGCCATCCCCCG
Seq A exon
TCTGAAGGATGCCAGCGACGTGCCCATCCAGTGTGAGATCTCCCCCCTTGTCTCCTACGGCGGGGAG
Seq C2 exon
GGGCTGGAGGAGCTGGTGAAGGAGCGGGAGTTCCGTGCACCTTTGGTCATCGATGAGGACGGGACCCACGAGCTGGTGCGCAACGGCATGTAGGCAGCACTGGGACCCGGCCGTGCTCAGCCATGGCATGGCTGCAGCCGTGCCTGGCTCCGGCGTGTCGTCTGCTTCTATTTATGTTTTAATTTAAAAACCAAACACTCGGTGGATGCCCCCGCTGTGAAGCGCAGCCTCGGTGCTGCTCTTTGCACTGTGGGCGTGTAAACCTGTACATACCAATGGTCAGCGTACCTGCAGAGGGGTTTTATGGTACAGGGCTGGGGTTAACCCTGGGTTTTTATTTTTCTCGAAGCGACGTGGCTATTTTTTTAATAGGATCCTTGTTACGGCCCACCCCCTTTTTGCTCATACTTTGTACATTGCACAACTGGAATTGCCCCATTAAAACCTCTGTGTCCCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002725-'8-8,'8-7,10-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.152 C2=0.333
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(16.6=100)
A:
PF0170413=UDPGP=PD(4.7=78.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACGGCAAGGACAACCC
R:
GATGACCAAAGGTGCACGGAA
Band lengths:
176-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]