MmuALTA0020109-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026975 | Wdr85
Description
WD repeat domain 85 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24822022-24824438:+
Coord C1 exon
chr2:24822022-24822194
Coord A exon
NA
Coord C2 exon
chr2:24824405-24824438
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGACTTCTGTCTTCCCACAGGGG
3' ss Score
10.99
Exon sequences
Seq C1 exon
GGCCAGAGAACAGCCCTTGAAGATCATTAGCAGTGATTCTAAGGGGCAGTTGCACCTCCTGATGGTGAATGAGGGCACAGCTGAACTACAGCTAGTAGCATCTTGGCCAGCCCATCACTTTGAGGCCTGGATTGCTGCTTTCAATTACTGGCAGACAGAACTCGTGTATTCAG
Seq A exon
NA
Seq C2 exon
GGGGAGATGACTGCCTTCTGAGAGGCTGGGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975-7-6,7-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040027=WD40=PU(20.0=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGTAGCATCTTGGCCAGC
R:
AGCCTCTCAGAAGGCAGTCAT
Band lengths:
110-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: