BtaALTA0009742-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000038691 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr11:105577667-105582014:+
Coord C1 exon
chr11:105577667-105577839
Coord A exon
NA
Coord C2 exon
chr11:105581945-105582014
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
CGGTTTCCATTTCCCTGCAGGTG
3' ss Score
12.35
Exon sequences
Seq C1 exon
GGCCAGTGACCAGCCCTTGAAAATCATTAGCAGCGACTCCAAAGGGCAGCTCCACCTCCTGAAGATCCTCGAGGCGGGGCCCGGATTGCAGGCCGTGGTCACCTGGCGGGCCCATCAGTTCGAGGCCTGGGTTGCTGCTTTCAATTACTGGCAGACGGAAGTCGTGTACTCAG
Seq A exon
NA
Seq C2 exon
GTGGGGACGATGGCCTCCTGAAGGGCTGGGACACCAGGATGCCCGACACTGCTGCCTTCAGCAGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038691-6-10,6-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040027=WD40=PU(11.1=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTTCGAGGCCTGGGTT
R:
CTGAAGGCAGCAGTGTCGG
Band lengths:
121-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development