GgaALTA1011342-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008750 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr17:1576506-1577231:+
Coord C1 exon
chr17:1576506-1576678
Coord A exon
chr17:1577159-1577161
Coord C2 exon
chr17:1577162-1577231
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TGTGTTTTGTCTTTGTGCAGGAG
3' ss Score
10.05
Exon sequences
Seq C1 exon
CTCTAGTGGATGTCCTTTGAGAGTGATCAGCAGTGATTCAGAGGGGAAGCTGAATCTGTTCTCCATAGATGAATCTGCGCCTTCTGTGCACGTCCTGAACCAGTGGGAGGCTCACAAGTTTGAGGCCTGGATTGCTGCTTTTAATTACTGGAACATTGATATAGTGTATTCAG
Seq A exon
GAG
Seq C2 exon
GAGATGACAGCCTGCTGAAAGGCTGGGACACCAGATGCAATCCAGAGACTCCAGTGTTCACCAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750-3-7,3-6,3-5-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040027=WD40=PU(20.0=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGAGGCCTGGATTGCTG
R:
CTGGATTGCATCTGGTGTCCC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]